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Online resources for the Antibody Engineer

  • www.kabatdatabase.com
    Aligned immunoglobulin superfamily sequences collected over the course of 30 years
  • www.bioinf.org.uk/abs/simkab.html
    Dr. Andrew C.R. Martin's Group - KabatMan (simple interface to the Kabat Sequence Database)
  • http://imgt.cines.fr
    Knowledge resource specialized in the immunoglobulins (IG), T cell receptors (TR), major histocompatibility complex (MHC), immunoglobulin superfamily (IgSF), major histocompatibility complex superfamily (MhSF) and related proteins of the immune system(RPI) of human and other species, created in 1989 by Marie-Paule Lefrans (Université; Montpellier, CNRS)
  • www.mrc-cpe.cam.ac.uk/
    MRC Centre for Protein Engineering
  • www.unizh.ch/
    Zurich Universitet
  • http://antibody.bath.ac.uk
    Web Antibody Modelling at the University of Bath
  • www.path.cam.ac.uk/~mrc7/mikeimages.html
    Mikes Immunoglobulin structure/function homepage
  • www.antibodyresource.com
    A guide designed by scientists for scientists to find companies that sell custom monoclonal, polyclonal, and catalogue antibodies
  • http://people.cryst.bbk.ac.uk/~ubcg07s
    London-based research homepage
  • www.expasy.org
    Expert Protein Analysis System-proteomics server of the Swiss Institute of Bioinformatics(SIB) dedicated to the analysis of protein sequences and structures
  • http://xray.bmc.uu.se/
    Biomedical Centre, Uppsala, Sweden
  • http://imsb.au.dk/
    Centre for Structural Biology - Aarhus University
  • www.umass.edu/microbio/rasmol/index2.htm
    RasMol Classic site - University of Massachusetts, Amberst MA USA
  • http://pymol.sourceforge.net
      has moved to www.pymol.org 
    PyMol is good for viewing 3d structures,rendering figures, giving presentations, animating molecules, sharing visualizations, exporting geometry
  • http://ca.expasy.org/spdbv
    The Swiss Institute of Bioinformatics-Swiss-Pdb Viewer, DeepView
  • http://trantor.bioc.columbia.edu/grasp
    Barry Honigs Group in the Department of Biochemistry and Molecular Biophysics http://cpmcnet.columbia.edu/dept/gsas/biochem/
  • http://xray.bmc.uu.se/~gerard/manuals
    Uppsala Software Factory- Software and Resources for Macromolecular Crystallography and Structural Biology
  • www.rcsb.org/pdb
    A resource for Studying Biological Macromolecules
  • http://scop.mrc-lmb.cam.ac.uk/scop Structural Clasification of Proteins
  • www.ebi.ac.uk/dali/fssp
    Database based on all-against-all 3D structure comparison of protein structures in the Protein Data Bank (PDB).
  • http://www.expasy.org/swissmod
    Swiss Institute of Bioinformatics- Swiss Model is fully automated protein structure homology-modeling server, accessible via the ExPaSy web server, or from the program DeepView(Swiss Pdb-Viewer).The purpose of this server is to make Protein Modelling accessible to all biochemists and molecular biologists worldwide
  • www.salilab.org/modeller/modeller.html
    Modeller-Program for Comparative Protein Structure Modelling by Satisfaction of Spatial Restraints- Modeller is used for homology or comparative modeling of protein three-dimensional structures(1,2)
  • www.accelrys.com/products/cnx
    X-Ray Crystallography and NMR Refinement - CNX is an integrated software package that provides a one-stop solution of validated science for crystallograhers. It is based on the widely used programs X-PLOR and CNS, but extends the capabilities of these programs
  • www.ccp4.ac.uk
    Collaborative Computational Project-Software for Macromolecular X-Ray Crystallography
  • www.scripps.edu/
    Biomedical research facility- Leader in the discovery and application of biomedical breakthroughs that improve human health
  • http://dock.compbio.ucsf.edu
    Kuntz Group, Shoichet Group-The Official UCSF DOCK website
  • www.scripps.edu/pub/olson-web/doc/autodock
    AutoDock is a suite of automated docking tools.Designed to predict how small molecules, such as substrates or drug candidates, bind to a receptor of known 3D structure
  • www.molsoft.com/
    Molsoft is a La Jolla, California based company that is a primary source of new breaktrough technologies in: molecular graphics and visualization, molecular modeling, docking and virtual screening, computational biology and chemistry
  • www.delphion.com
    Search 54 million worldwide patents- Powerful reporting and analysis tools

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